COVID-19

REACT Observational Study of COVID-19

Year Started: 2020

SARS-CoV-2 has emerged as a global pandemic in 2020. There are no effective treatments and an effective vaccine has not been developed. Whilst many patients recover without need for hospitalisation, a small proportion go on to develop severe disease. A better understanding of the natural history of this disease will facilitate improved clinical management with the potential to identify options for intervention. This proposal is for the formal collection of characterisation data for patients tested for and/or admitted with a confirmed diagnosis of SARS-CoV-2 infection. This study responds to the need for a clear understanding of the natural history of this novel, emerging pandemic. Specifically phenotypic characterisation may enable application of personalised medical approaches, based on clinical course, to aid earlier identification of patients at risk of severe disease, and facilitate identification of potential targets for novel treatments. The collection and characterisation of these patients reflects a strong partnership between NHS and academic critical care and respiratory medicine in Southampton that acts as both a secondary and tertiary centre, with support from the digital experimental cancer medicine team at the University of Manchester.



Access:
Access restricted at present
Type:
Disease specific
Status:
In progress
Consent restrictions:
Commercial restriction, Xenograft restriction


Associated Data Type Procurement Timeframe
Biomarker datasets > 6 months
Clinical records > 6 months
Followup records > 6 months
Freezer temperature logs > 6 months
Pathology records > 6 months
Physiological/biochemical measurements > 6 months
Quality indicators > 6 months
Treatment records > 6 months
Donor Ethnicity > 6 months


Male

Adolescent (12 - 18 years)

11 - 100 donors

Material Type Extraction Procedure Storage Temperature Preservation Type Macroscopic Assessment % of Sample Set
Serum -60°C to -85°C Not applicable 51 - 75%
Plasma -60°C to -85°C Not applicable 11 - 25%
Whole blood -60°C to -85°C Not applicable 0 - 10%
Swab -60°C to -85°C Not applicable 0 - 10%
Saliva -60°C to -85°C Not applicable 11 - 25%
Peripheral blood mononuclear cells (PBMC) Liquid nitrogen vapor phase Not applicable 0 - 10%
Urine -60°C to -85°C Not applicable 0 - 10%
RNA -60°C to -85°C Not applicable 0 - 10%


Female

Adolescent (12 - 18 years)

11 - 100 donors

Material Type Extraction Procedure Storage Temperature Preservation Type Macroscopic Assessment % of Sample Set
Serum -60°C to -85°C Not applicable 51 - 75%
Plasma -60°C to -85°C Not applicable 11 - 25%
Whole blood -60°C to -85°C Not applicable 0 - 10%
Swab -60°C to -85°C Not applicable 0 - 10%
Saliva -60°C to -85°C Not applicable 11 - 25%
Peripheral blood mononuclear cells (PBMC) Liquid nitrogen vapor phase Not applicable 0 - 10%
Urine -60°C to -85°C Not applicable 0 - 10%
RNA -60°C to -85°C Not applicable 0 - 10%

Fit and well (finding)

An RNAseq study of SARS-CoV2 viral entry routes, disease biomarkers and therapeutic targets in the eye

Year Started: 2020

SARS-CoV2 is the virus which causes COVID-19, the form of coronavirus which is now a global pandemic. The gene ACE2 is involved when SARS-CoV2 infection occurs and the eye is an important possible place of entry for the virus to get into the body. It is thought that the virus enters the eye through ACE2, but this remains unclear. We will look at gene expression in eye tissue to identify whether ACE2 is important in the eye and generate a picture of biomarkers of the eye which may predict disease severity. This will help in understanding the first steps in the mechanism of infection and potential targets for therapies. We will be using excess surgical tissue from the eyes of non COVID-19 patients undergoing surgery for other reasons.



Access:
Access restricted at present
Type:
Cohort
Status:
In progress
Consent restrictions:
Commercial restriction, Xenograft restriction


Associated Data Type Procurement Timeframe
Biomarker datasets > 6 months
Clinical records > 6 months
Genomic datasets > 6 months
Physiological/biochemical measurements > 6 months
Quality indicators > 6 months
Donor Ethnicity > 6 months


Male

Adolescent (12 - 18 years)

1 - 10 donors

Material Type Extraction Procedure Storage Temperature Preservation Type Macroscopic Assessment % of Sample Set
Tissue specimen -60°C to -85°C Not applicable 100%
RNA -60°C to -85°C Not applicable 100%


Female

Adolescent (12 - 18 years)

1 - 10 donors

Material Type Extraction Procedure Storage Temperature Preservation Type Macroscopic Assessment % of Sample Set
Tissue specimen -60°C to -85°C Not applicable 100%
RNA -60°C to -85°C Not applicable 100%